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Comment: Fixed heading.
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added short description of Biopython project, updated and added links
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This page attempts to collect all the Python packages associated with medicine, pre-clinical research, life science and bioinformatics for the community. Its modelled along the [[http://wiki.debian.org/DebianMed | Debian Med project]] |
This page attempts to collect all the Python packages associated with medicine, pre-clinical research, life science and bioinformatics for the community. Its modelled along the [[http://wiki.debian.org/DebianMed|Debian Med project]] |
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Biopython facilitates the use of Python for bioinformatics through high-quality, reusable modules and classes. Biopython features include parsers for various Bioinformatics file formats (BLAST, Clustalw, FASTA, Genbank,...), access to online services (NCBI, Expasy,...), interfaces to common and not-so-common programs (Clustalw, DSSP, MSMS...), a standard sequence class, various clustering modules, a KD tree data structure, etc. | |
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* [[http://biopython.org/wiki/Biopython | Biopython wiki]] | * compatible with Python 2 and 3 |
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* Debian packages: [[http://packages.debian.org/unstable/python/python-biopython-sql | unstable release]] | * requires: [[NumPy|NumPy]] |
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* Ubuntu packages: [[http://packages.ubuntu.com/jaunty/python/python-biopython-sql | jaunty]] | * [[http://biopython.org/wiki/Biopython|Biopython wiki]] [[https://pypi.python.org/pypi/biopython|Biopython at PyPI]] * Linux packages: [[https://packages.debian.org/search?searchon=sourcenames&keywords=python-biopython|python-biopython Debian packages]] [[http://packages.ubuntu.com/search?suite=default§ion=all&arch=any&keywords=biopython&searchon=sourcenames|python-biopython Ubuntu packages]] [[https://apps.fedoraproject.org/packages/python-biopython|python-biopython Fedora package]] [[https://www.archlinux.org/packages/?q=biopython|python-biopython Archlinux packages]] |
PythonMed
This page attempts to collect all the Python packages associated with medicine, pre-clinical research, life science and bioinformatics for the community. Its modelled along the Debian Med project
Biopython
Biopython facilitates the use of Python for bioinformatics through high-quality, reusable modules and classes. Biopython features include parsers for various Bioinformatics file formats (BLAST, Clustalw, FASTA, Genbank,...), access to online services (NCBI, Expasy,...), interfaces to common and not-so-common programs (Clustalw, DSSP, MSMS...), a standard sequence class, various clustering modules, a KD tree data structure, etc.
- compatible with Python 2 and 3
requires: NumPy
Linux packages: python-biopython Debian packages python-biopython Ubuntu packages python-biopython Fedora package python-biopython Archlinux packages